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Expanded Genetic Codes in Next Generation Sequencing Enable Decontamination and Mitochondrial Enrichment

Overview of attention for article published in PLOS ONE, May 2014
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Title
Expanded Genetic Codes in Next Generation Sequencing Enable Decontamination and Mitochondrial Enrichment
Published in
PLOS ONE, May 2014
DOI 10.1371/journal.pone.0096492
Pubmed ID
Authors

Kevin J. McKernan, Jessica Spangler, Lei Zhang, Vasisht Tadigotla, Stephen McLaughlin, Jason Warner, Amir Zare, Richard G. Boles

Abstract

We have developed a PCR method, coined Déjà vu PCR, that utilizes six nucleotides in PCR with two methyl specific restriction enzymes that respectively digest these additional nucleotides. Use of this enzyme-and-nucleotide combination enables what we term a "DNA diode", where DNA can advance in a laboratory in only one direction and cannot feedback into upstream assays. Here we describe aspects of this method that enable consecutive amplification with the introduction of a 5th and 6th base while simultaneously providing methylation dependent mitochondrial DNA enrichment. These additional nucleotides enable a novel DNA decontamination technique that generates ephemeral and easy to decontaminate DNA.

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Geographical breakdown

Country Count As %
Italy 1 4%
Unknown 22 96%

Demographic breakdown

Readers by professional status Count As %
Researcher 9 39%
Student > Bachelor 3 13%
Student > Ph. D. Student 3 13%
Student > Master 2 9%
Other 2 9%
Other 0 0%
Unknown 4 17%
Readers by discipline Count As %
Agricultural and Biological Sciences 9 39%
Biochemistry, Genetics and Molecular Biology 8 35%
Nursing and Health Professions 1 4%
Social Sciences 1 4%
Neuroscience 1 4%
Other 0 0%
Unknown 3 13%