@jermdemo @autobencoder @jjc2718 We control for test-train leakage in two ways: measure sequence identity between test and train for our random split, and we also have a clustered split, constructed as Sean does in https://t.co/S7lfxOO3eh
@larsjuhljensen We control for test-train leakage in two ways: measure sequence identity between test and train for our random split, and we also have a clustered split, constructed as Sean does in https://t.co/S7lfxOO3eh
@bryan_hepworth @4130chromo @sjcockell The group at the LMB I was in used to have an FPGA for @hmm3r way back in ~2002-2003 from TimeLogic but HMMER v3 was rewritten to use a new heuristic and native CPU SSE SIMD optimisations giving x100-1000 fold speed-u
@iddux @hmm3r I've used this in the past: https://t.co/NXmKP0NQyg
🎉 New formula hmmer2 in Brewsci/bio for Linux! 🍺 brew install brewsci/bio/hmmer2 🏠 https://t.co/AIBMAMVDhp 📖 https://t.co/F0qlE41tb0 https://t.co/Nf59FAShee https://t.co/XoBa1GCIIH 🔬 https://t.co/aaJgJTeT2y 🐧 https://t.co/lyKHNJu5CN @linuxbrew #bioinformat
@torstenseemann @lh3lh3 in general a lot of scope - see this comprehensive guide from @cryptogenomicon https://t.co/Oag6iA9nMo
OF NOTE: Accelerated Profile HMM Searches. http://t.co/v8ydrtSvlE
OF NOTE: Accelerated Profile HMM Searches. http://t.co/v8ydrtSvlE
@marc_rr impressive! Even the non-web version has 235 cites http://t.co/SV3S0jrKtE
@marc_rr impressive! Even the non-web version has 235 cites http://t.co/SV3S0jrKtE
RT @bffo: RF Sean Eddy's paper in PLoS CB: Accelerated Profile HMM Searches http://t.co/P0c2H3dA #ISB2012
RF Sean Eddy's paper in PLoS CB: Accelerated Profile HMM Searches http://t.co/P0c2H3dA #ISB2012
RT @fungalgenomes: How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/LOv8onRS
RT @fungalgenomes: How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/LOv8onRS
RT @fungalgenomes: How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/LOv8onRS
Accelerated Profile HMM Searches http://t.co/ixloUB1o
RT @fungalgenomes: How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/LOv8onRS
RT @fungalgenomes: How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/LOv8onRS
RT @hyphaltip: How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/0kBNuekd
How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/LOv8onRS
How did HMMER3 get so fast?See: Accelerated Profile HMM Searches http://t.co/0kBNuekd
Connotea: Accelerated Profile HMM Searches: Posted by andym to hmm Bioinformatics on Fri Oct 21 2011 http://t.co/yUwSBqfu
RT @tonets: PLoS Computational Biology: Accelerated Profile HMM Searches http://t.co/3Gpog9nh
RT @tonets: PLoS Computational Biology: Accelerated Profile HMM Searches http://t.co/3Gpog9nh
RT @tonets: PLoS Computational Biology: Accelerated Profile HMM Searches http://t.co/3Gpog9nh
PLoS Computational Biology: Accelerated Profile HMM Searches http://t.co/3Gpog9nh
#PLoS: Accelerated Profile HMM Searches http://t.co/b9lez3il