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Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri

Overview of attention for article published in PLOS ONE, May 2014
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Title
Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
Published in
PLOS ONE, May 2014
DOI 10.1371/journal.pone.0096434
Pubmed ID
Authors

Lucia Manni, Fabio Gasparini, Kohji Hotta, Katherine J. Ishizuka, Lorenzo Ricci, Stefano Tiozzo, Ayelet Voskoboynik, Delphine Dauga

Abstract

Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed the first ontology for anatomy and asexual development (blastogenesis) of a bilaterian, the colonial tunicate Botryllus schlosseri. Tunicates, like Botryllus schlosseri, are non-vertebrates and the only chordate taxon species that reproduce both sexually and asexually. Their tadpole larval stage possesses structures characteristic of all chordates, i.e. a notochord, a dorsal neural tube, and gill slits. Larvae settle and metamorphose into individuals that are either solitary or colonial. The latter reproduce both sexually and asexually and these two reproductive modes lead to essentially the same adult body plan. The Botryllus schlosseri Ontology of Development and Anatomy (BODA) will facilitate the comparison between both types of development. BODA uses the rules defined by the Open Biomedical Ontologies Foundry. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development. We invite the scientific community to use this resource as a reference for the anatomy and developmental ontology of B. schlosseri and encourage recommendations for updates and improvements.

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Geographical breakdown

Country Count As %
Brazil 3 4%
Colombia 1 1%
Unknown 64 94%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 15 22%
Student > Master 13 19%
Student > Bachelor 7 10%
Professor > Associate Professor 6 9%
Professor 4 6%
Other 11 16%
Unknown 12 18%
Readers by discipline Count As %
Agricultural and Biological Sciences 23 34%
Biochemistry, Genetics and Molecular Biology 19 28%
Environmental Science 3 4%
Medicine and Dentistry 2 3%
Engineering 2 3%
Other 4 6%
Unknown 15 22%