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Genome-Wide Association Study Identifies a Novel Canine Glaucoma Locus

Overview of attention for article published in PLOS ONE, August 2013
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Title
Genome-Wide Association Study Identifies a Novel Canine Glaucoma Locus
Published in
PLOS ONE, August 2013
DOI 10.1371/journal.pone.0070903
Pubmed ID
Authors

Saija J. Ahonen, Elina Pietilä, Cathryn S. Mellersh, Katriina Tiira, Liz Hansen, Gary S. Johnson, Hannes Lohi

Abstract

Glaucoma is an optic neuropathy and one of the leading causes of blindness. Its hereditary forms are classified into primary closed-angle (PCAG), primary open-angle (POAG) and primary congenital glaucoma (PCG). Although many loci have been mapped in human, only a few genes have been identified that are associated with the development of glaucoma and the genetic basis of the disease remains poorly understood. Glaucoma has also been described in many dog breeds, including Dandie Dinmont Terriers (DDT) in which it is a late-onset (>7 years) disease. We designed clinical and genetic studies to better define the clinical features of glaucoma in the DDT and to identify the genetic cause. Clinical diagnosis was based on ophthalmic examinations of the affected dogs and 18 additionally investigated unaffected DDTs. We collected DNA from over 400 DTTs and a genome wide association study was performed in a cohort of 23 affected and 23 controls, followed by a fine mapping, a replication study and candidate gene sequencing. The clinical study suggested that ocular abnormalities including abnormal iridocorneal angles and pectinate ligament dysplasia are common (50% and 72%, respectively) in the breed and the disease resembles human PCAG. The genetic study identified a novel 9.5 Mb locus on canine chromosome 8 including the 1.6 Mb best associated region (p = 1.63 × 10(-10), OR = 32 for homozygosity). Mutation screening in five candidate genes did not reveal any causative variants. This study indicates that although ocular abnormalities are common in DDTs, the genetic risk for glaucoma is conferred by a novel locus on CFA8. The canine locus shares synteny to a region in human chromosome 14q, which harbors several loci associated with POAG and PCG. Our study reveals a new locus for canine glaucoma and ongoing molecular studies will likely help to understand the genetic etiology of the disease.

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Geographical breakdown

Country Count As %
Finland 1 2%
Unknown 45 98%

Demographic breakdown

Readers by professional status Count As %
Other 8 17%
Researcher 6 13%
Student > Bachelor 6 13%
Student > Ph. D. Student 5 11%
Student > Master 3 7%
Other 8 17%
Unknown 10 22%
Readers by discipline Count As %
Agricultural and Biological Sciences 11 24%
Veterinary Science and Veterinary Medicine 7 15%
Medicine and Dentistry 6 13%
Biochemistry, Genetics and Molecular Biology 4 9%
Computer Science 2 4%
Other 6 13%
Unknown 10 22%