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A Simulation Optimization Approach to Epidemic Forecasting

Overview of attention for article published in PLOS ONE, June 2013
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Title
A Simulation Optimization Approach to Epidemic Forecasting
Published in
PLOS ONE, June 2013
DOI 10.1371/journal.pone.0067164
Pubmed ID
Authors

Elaine O. Nsoesie, Richard J. Beckman, Sara Shashaani, Kalyani S. Nagaraj, Madhav V. Marathe

Abstract

Reliable forecasts of influenza can aid in the control of both seasonal and pandemic outbreaks. We introduce a simulation optimization (SIMOP) approach for forecasting the influenza epidemic curve. This study represents the final step of a project aimed at using a combination of simulation, classification, statistical and optimization techniques to forecast the epidemic curve and infer underlying model parameters during an influenza outbreak. The SIMOP procedure combines an individual-based model and the Nelder-Mead simplex optimization method. The method is used to forecast epidemics simulated over synthetic social networks representing Montgomery County in Virginia, Miami, Seattle and surrounding metropolitan regions. The results are presented for the first four weeks. Depending on the synthetic network, the peak time could be predicted within a 95% CI as early as seven weeks before the actual peak. The peak infected and total infected were also accurately forecasted for Montgomery County in Virginia within the forecasting period. Forecasting of the epidemic curve for both seasonal and pandemic influenza outbreaks is a complex problem, however this is a preliminary step and the results suggest that more can be achieved in this area.

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Geographical breakdown

Country Count As %
United States 3 3%
France 1 <1%
Germany 1 <1%
Japan 1 <1%
United Kingdom 1 <1%
Unknown 97 93%

Demographic breakdown

Readers by professional status Count As %
Researcher 22 21%
Student > Ph. D. Student 19 18%
Student > Master 11 11%
Other 7 7%
Professor > Associate Professor 6 6%
Other 15 14%
Unknown 24 23%
Readers by discipline Count As %
Computer Science 13 13%
Engineering 9 9%
Medicine and Dentistry 9 9%
Mathematics 8 8%
Agricultural and Biological Sciences 7 7%
Other 26 25%
Unknown 32 31%