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PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies

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Title
PolysacDB: A Database of Microbial Polysaccharide Antigens and Their Antibodies
Published in
PLOS ONE, April 2012
DOI 10.1371/journal.pone.0034613
Pubmed ID
Authors

Abhijit Aithal, Arun Sharma, Shilpy Joshi, Gajendra P. S. Raghava, Grish C. Varshney

Abstract

Vaccines based on microbial cell surface polysaccharides have long been considered as attractive means to control infectious diseases. To realize this goal, detailed systematic information about the antigenic polysaccharide is necessary. However, only a few databases that provide limited knowledge in this area are available. This paper describes PolysacDB, a manually curated database of antigenic polysaccharides. We collected and compiled comprehensive information from literature and web resources about antigenic polysaccharides of microbial origin. The current version of the database has 1,554 entries of 149 different antigenic polysaccharides from 347 different microbes. Each entry provides comprehensive information about an antigenic polysaccharide, i.e., its origin, function, protocols for its conjugation to carriers, antibodies produced, details of assay systems, specificities of antibodies, proposed epitopes involved and antibody utilities. For convenience to the user, we have integrated web interface for searching, advanced searching and browsing data in database. This database will be useful for researchers working on polysaccharide-based vaccines. It is freely available from the URL: http://crdd.osdd.net/raghava/polysacdb/.

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Geographical breakdown

Country Count As %
India 1 3%
United States 1 3%
Unknown 27 93%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 9 31%
Researcher 6 21%
Student > Master 4 14%
Other 2 7%
Student > Bachelor 2 7%
Other 2 7%
Unknown 4 14%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 9 31%
Agricultural and Biological Sciences 8 28%
Medicine and Dentistry 5 17%
Immunology and Microbiology 1 3%
Unspecified 1 3%
Other 0 0%
Unknown 5 17%