| Title |
SNPpy - Database Management for SNP Data from Genome Wide Association Studies
|
|---|---|
| Published in |
PLOS ONE, October 2011
|
| DOI | 10.1371/journal.pone.0024982 |
| Pubmed ID | |
| Authors |
Faheem Mitha, Herodotos Herodotou, Nedyalko Borisov, Chen Jiang, Josh Yoder, Kouros Owzar |
| Abstract |
We describe SNPpy, a hybrid script database system using the Python SQLAlchemy library coupled with the PostgreSQL database to manage genotype data from Genome-Wide Association Studies (GWAS). This system makes it possible to merge study data with HapMap data and merge across studies for meta-analyses, including data filtering based on the values of phenotype and Single-Nucleotide Polymorphism (SNP) data. SNPpy and its dependencies are open source software. |
X Demographics
The data shown below were collected from the profiles of 5 X users who shared this research output. Click here to find out more about how the information was compiled.
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 5 | 100% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Members of the public | 5 | 100% |
Mendeley readers
The data shown below were compiled from readership statistics for 67 Mendeley readers of this research output. Click here to see the associated Mendeley record.
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| United States | 3 | 4% |
| France | 2 | 3% |
| Sweden | 1 | 1% |
| Germany | 1 | 1% |
| Canada | 1 | 1% |
| United Kingdom | 1 | 1% |
| New Zealand | 1 | 1% |
| Poland | 1 | 1% |
| Unknown | 56 | 84% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Researcher | 25 | 37% |
| Student > Ph. D. Student | 13 | 19% |
| Student > Master | 8 | 12% |
| Other | 4 | 6% |
| Student > Bachelor | 3 | 4% |
| Other | 6 | 9% |
| Unknown | 8 | 12% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 29 | 43% |
| Computer Science | 11 | 16% |
| Biochemistry, Genetics and Molecular Biology | 5 | 7% |
| Medicine and Dentistry | 4 | 6% |
| Engineering | 3 | 4% |
| Other | 5 | 7% |
| Unknown | 10 | 15% |