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Efficient and Exact Sampling of Simple Graphs with Given Arbitrary Degree Sequence

Overview of attention for article published in PLOS ONE, April 2010
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Title
Efficient and Exact Sampling of Simple Graphs with Given Arbitrary Degree Sequence
Published in
PLOS ONE, April 2010
DOI 10.1371/journal.pone.0010012
Pubmed ID
Authors

Charo I. Del Genio, Hyunju Kim, Zoltán Toroczkai, Kevin E. Bassler

Abstract

Uniform sampling from graphical realizations of a given degree sequence is a fundamental component in simulation-based measurements of network observables, with applications ranging from epidemics, through social networks to Internet modeling. Existing graph sampling methods are either link-swap based (Markov-Chain Monte Carlo algorithms) or stub-matching based (the Configuration Model). Both types are ill-controlled, with typically unknown mixing times for link-swap methods and uncontrolled rejections for the Configuration Model. Here we propose an efficient, polynomial time algorithm that generates statistically independent graph samples with a given, arbitrary, degree sequence. The algorithm provides a weight associated with each sample, allowing the observable to be measured either uniformly over the graph ensemble, or, alternatively, with a desired distribution. Unlike other algorithms, this method always produces a sample, without back-tracking or rejections. Using a central limit theorem-based reasoning, we argue, that for large , and for degree sequences admitting many realizations, the sample weights are expected to have a lognormal distribution. As examples, we apply our algorithm to generate networks with degree sequences drawn from power-law distributions and from binomial distributions.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 120 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 6 5%
Italy 3 3%
Germany 3 3%
China 2 2%
France 1 <1%
United Kingdom 1 <1%
Spain 1 <1%
Russia 1 <1%
Unknown 102 85%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 43 36%
Researcher 30 25%
Student > Master 12 10%
Student > Bachelor 8 7%
Professor 7 6%
Other 17 14%
Unknown 3 3%
Readers by discipline Count As %
Computer Science 31 26%
Physics and Astronomy 25 21%
Mathematics 19 16%
Agricultural and Biological Sciences 11 9%
Engineering 8 7%
Other 14 12%
Unknown 12 10%