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Population Decoding in Rat Barrel Cortex: Optimizing the Linear Readout of Correlated Population Responses

Overview of attention for article published in PLoS Computational Biology, January 2014
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Title
Population Decoding in Rat Barrel Cortex: Optimizing the Linear Readout of Correlated Population Responses
Published in
PLoS Computational Biology, January 2014
DOI 10.1371/journal.pcbi.1003415
Pubmed ID
Authors

Mehdi Adibi, James S. McDonald, Colin W. G. Clifford, Ehsan Arabzadeh

Abstract

Sensory information is encoded in the response of neuronal populations. How might this information be decoded by downstream neurons? Here we analyzed the responses of simultaneously recorded barrel cortex neurons to sinusoidal vibrations of varying amplitudes preceded by three adapting stimuli of 0, 6 and 12 µm in amplitude. Using the framework of signal detection theory, we quantified the performance of a linear decoder which sums the responses of neurons after applying an optimum set of weights. Optimum weights were found by the analytical solution that maximized the average signal-to-noise ratio based on Fisher linear discriminant analysis. This provided a biologically plausible decoder that took into account the neuronal variability, covariability, and signal correlations. The optimal decoder achieved consistent improvement in discrimination performance over simple pooling. Decorrelating neuronal responses by trial shuffling revealed that, unlike pooling, the performance of the optimal decoder was minimally affected by noise correlation. In the non-adapted state, noise correlation enhanced the performance of the optimal decoder for some populations. Under adaptation, however, noise correlation always degraded the performance of the optimal decoder. Nonetheless, sensory adaptation improved the performance of the optimal decoder mainly by increasing signal correlation more than noise correlation. Adaptation induced little systematic change in the relative direction of signal and noise. Thus, a decoder which was optimized under the non-adapted state generalized well across states of adaptation.

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Geographical breakdown

Country Count As %
United States 3 3%
Japan 1 1%
Canada 1 1%
Australia 1 1%
Unknown 81 93%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 27 31%
Researcher 25 29%
Student > Master 7 8%
Student > Bachelor 6 7%
Student > Doctoral Student 5 6%
Other 12 14%
Unknown 5 6%
Readers by discipline Count As %
Agricultural and Biological Sciences 30 34%
Neuroscience 24 28%
Engineering 8 9%
Medicine and Dentistry 5 6%
Psychology 4 5%
Other 8 9%
Unknown 8 9%