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Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection

Overview of attention for article published in PLoS Computational Biology, March 2013
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Title
Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection
Published in
PLoS Computational Biology, March 2013
DOI 10.1371/journal.pcbi.1002961
Pubmed ID
Authors

Richard P. Mann, Andrea Perna, Daniel Strömbom, Roman Garnett, James E. Herbert-Read, David J. T. Sumpter, Ashley J. W. Ward

Abstract

Inference of interaction rules of animals moving in groups usually relies on an analysis of large scale system behaviour. Models are tuned through repeated simulation until they match the observed behaviour. More recent work has used the fine scale motions of animals to validate and fit the rules of interaction of animals in groups. Here, we use a Bayesian methodology to compare a variety of models to the collective motion of glass prawns (Paratya australiensis). We show that these exhibit a stereotypical 'phase transition', whereby an increase in density leads to the onset of collective motion in one direction. We fit models to this data, which range from: a mean-field model where all prawns interact globally; to a spatial Markovian model where prawns are self-propelled particles influenced only by the current positions and directions of their neighbours; up to non-Markovian models where prawns have 'memory' of previous interactions, integrating their experiences over time when deciding to change behaviour. We show that the mean-field model fits the large scale behaviour of the system, but does not capture the observed locality of interactions. Traditional self-propelled particle models fail to capture the fine scale dynamics of the system. The most sophisticated model, the non-Markovian model, provides a good match to the data at both the fine scale and in terms of reproducing global dynamics, while maintaining a biologically plausible perceptual range. We conclude that prawns' movements are influenced by not just the current direction of nearby conspecifics, but also those encountered in the recent past. Given the simplicity of prawns as a study system our research suggests that self-propelled particle models of collective motion should, if they are to be realistic at multiple biological scales, include memory of previous interactions and other non-Markovian effects.

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The data shown below were compiled from readership statistics for 100 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 4 4%
Switzerland 2 2%
Germany 1 1%
China 1 1%
Sweden 1 1%
Unknown 91 91%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 26 26%
Researcher 23 23%
Student > Master 11 11%
Professor > Associate Professor 10 10%
Professor 6 6%
Other 15 15%
Unknown 9 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 34 34%
Physics and Astronomy 14 14%
Computer Science 12 12%
Mathematics 7 7%
Engineering 7 7%
Other 11 11%
Unknown 15 15%