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Using Molecular Mechanics to Predict Bulk Material Properties of Fibronectin Fibers

Overview of attention for article published in PLoS Computational Biology, December 2012
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Title
Using Molecular Mechanics to Predict Bulk Material Properties of Fibronectin Fibers
Published in
PLoS Computational Biology, December 2012
DOI 10.1371/journal.pcbi.1002845
Pubmed ID
Authors

Mark J. Bradshaw, Man C. Cheung, Daniel J. Ehrlich, Michael L. Smith

Abstract

The structural proteins of the extracellular matrix (ECM) form fibers with finely tuned mechanical properties matched to the time scales of cell traction forces. Several proteins such as fibronectin (Fn) and fibrin undergo molecular conformational changes that extend the proteins and are believed to be a major contributor to the extensibility of bulk fibers. The dynamics of these conformational changes have been thoroughly explored since the advent of single molecule force spectroscopy and molecular dynamics simulations but remarkably, these data have not been rigorously applied to the understanding of the time dependent mechanics of bulk ECM fibers. Using measurements of protein density within fibers, we have examined the influence of dynamic molecular conformational changes and the intermolecular arrangement of Fn within fibers on the bulk mechanical properties of Fn fibers. Fibers were simulated as molecular strands with architectures that promote either equal or disparate molecular loading under conditions of constant extension rate. Measurements of protein concentration within micron scale fibers using deep ultraviolet transmission microscopy allowed the simulations to be scaled appropriately for comparison to in vitro measurements of fiber mechanics as well as providing estimates of fiber porosity and water content, suggesting Fn fibers are approximately 75% solute. Comparing the properties predicted by single molecule measurements to in vitro measurements of Fn fibers showed that domain unfolding is sufficient to predict the high extensibility and nonlinear stiffness of Fn fibers with surprising accuracy, with disparately loaded fibers providing the best fit to experiment. This work shows the promise of this microstructural modeling approach for understanding Fn fiber properties, which is generally applicable to other ECM fibers, and could be further expanded to tissue scale by incorporating these simulated fibers into three dimensional network models.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 34 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 3%
Unknown 33 97%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 12 35%
Student > Master 6 18%
Professor > Associate Professor 3 9%
Researcher 3 9%
Student > Bachelor 2 6%
Other 3 9%
Unknown 5 15%
Readers by discipline Count As %
Engineering 11 32%
Materials Science 4 12%
Medicine and Dentistry 3 9%
Biochemistry, Genetics and Molecular Biology 2 6%
Computer Science 2 6%
Other 5 15%
Unknown 7 21%