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A Characterization of Scale Invariant Responses in Enzymatic Networks

Overview of attention for article published in PLoS Computational Biology, November 2012
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Title
A Characterization of Scale Invariant Responses in Enzymatic Networks
Published in
PLoS Computational Biology, November 2012
DOI 10.1371/journal.pcbi.1002748
Pubmed ID
Authors

Maja Skataric, Eduardo D. Sontag

Abstract

An ubiquitous property of biological sensory systems is adaptation: a step increase in stimulus triggers an initial change in a biochemical or physiological response, followed by a more gradual relaxation toward a basal, pre-stimulus level. Adaptation helps maintain essential variables within acceptable bounds and allows organisms to readjust themselves to an optimum and non-saturating sensitivity range when faced with a prolonged change in their environment. Recently, it was shown theoretically and experimentally that many adapting systems, both at the organism and single-cell level, enjoy a remarkable additional feature: scale invariance, meaning that the initial, transient behavior remains (approximately) the same even when the background signal level is scaled. In this work, we set out to investigate under what conditions a broadly used model of biochemical enzymatic networks will exhibit scale-invariant behavior. An exhaustive computational study led us to discover a new property of surprising simplicity and generality, uniform linearizations with fast output (ULFO), whose validity we show is both necessary and sufficient for scale invariance of three-node enzymatic networks (and sufficient for any number of nodes). Based on this study, we go on to develop a mathematical explanation of how ULFO results in scale invariance. Our work provides a surprisingly consistent, simple, and general framework for understanding this phenomenon, and results in concrete experimental predictions.

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Geographical breakdown

Country Count As %
Netherlands 2 4%
Portugal 1 2%
Brazil 1 2%
Japan 1 2%
United States 1 2%
Unknown 51 89%

Demographic breakdown

Readers by professional status Count As %
Researcher 23 40%
Student > Ph. D. Student 17 30%
Professor > Associate Professor 5 9%
Professor 2 4%
Other 2 4%
Other 6 11%
Unknown 2 4%
Readers by discipline Count As %
Agricultural and Biological Sciences 21 37%
Physics and Astronomy 8 14%
Engineering 8 14%
Biochemistry, Genetics and Molecular Biology 7 12%
Mathematics 2 4%
Other 7 12%
Unknown 4 7%