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A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts

Overview of attention for article published in PLoS Computational Biology, June 2012
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Title
A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts
Published in
PLoS Computational Biology, June 2012
DOI 10.1371/journal.pcbi.1002539
Pubmed ID
Authors

Arno Onken, Valentin Dragoi, Klaus Obermayer

Abstract

Evaluating the importance of higher-order correlations of neural spike counts has been notoriously hard. A large number of samples are typically required in order to estimate higher-order correlations and resulting information theoretic quantities. In typical electrophysiology data sets with many experimental conditions, however, the number of samples in each condition is rather small. Here we describe a method that allows to quantify evidence for higher-order correlations in exactly these cases. We construct a family of reference distributions: maximum entropy distributions, which are constrained only by marginals and by linear correlations as quantified by the Pearson correlation coefficient. We devise a Monte Carlo goodness-of-fit test, which tests--for a given divergence measure of interest--whether the experimental data lead to the rejection of the null hypothesis that it was generated by one of the reference distributions. Applying our test to artificial data shows that the effects of higher-order correlations on these divergence measures can be detected even when the number of samples is small. Subsequently, we apply our method to spike count data which were recorded with multielectrode arrays from the primary visual cortex of anesthetized cat during an adaptation experiment. Using mutual information as a divergence measure we find that there are spike count bin sizes at which the maximum entropy hypothesis can be rejected for a substantial number of neuronal pairs. These results demonstrate that higher-order correlations can matter when estimating information theoretic quantities in V1. They also show that our test is able to detect their presence in typical in-vivo data sets, where the number of samples is too small to estimate higher-order correlations directly.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 88 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 2 2%
United States 2 2%
Switzerland 1 1%
Chile 1 1%
Hong Kong 1 1%
Portugal 1 1%
Canada 1 1%
Germany 1 1%
Japan 1 1%
Other 1 1%
Unknown 76 86%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 25 28%
Researcher 15 17%
Student > Master 11 13%
Professor > Associate Professor 5 6%
Student > Bachelor 4 5%
Other 15 17%
Unknown 13 15%
Readers by discipline Count As %
Agricultural and Biological Sciences 24 27%
Neuroscience 15 17%
Physics and Astronomy 9 10%
Computer Science 7 8%
Engineering 7 8%
Other 14 16%
Unknown 12 14%