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Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection

Overview of attention for article published in PLoS Computational Biology, January 2012
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Title
Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection
Published in
PLoS Computational Biology, January 2012
DOI 10.1371/journal.pcbi.1002308
Pubmed ID
Authors

Richard P. Mann, Andrea Perna, Daniel Strömbom, Roman Garnett, James E. Herbert-Read, David J. T. Sumpter, Ashley J. W. Ward

Abstract

Inference of interaction rules of animals moving in groups usually relies on an analysis of large scale system behaviour. Models are tuned through repeated simulation until they match the observed behaviour. More recent work has used the fine scale motions of animals to validate and fit the rules of interaction of animals in groups. Here, we use a Bayesian methodology to compare a variety of models to the collective motion of glass prawns (Paratya australiensis). We show that these exhibit a stereotypical 'phase transition', whereby an increase in density leads to the onset of collective motion in one direction. We fit models to this data, which range from: a mean-field model where all prawns interact globally; to a spatial Markovian model where prawns are self-propelled particles influenced only by the current positions and directions of their neighbours; up to non-Markovian models where prawns have 'memory' of previous interactions, integrating their experiences over time when deciding to change behaviour. We show that the mean-field model fits the large scale behaviour of the system, but does not capture fine scale rules of interaction, which are primarily mediated by physical contact. Conversely, the Markovian self-propelled particle model captures the fine scale rules of interaction but fails to reproduce global dynamics. The most sophisticated model, the non-Markovian model, provides a good match to the data at both the fine scale and in terms of reproducing global dynamics. We conclude that prawns' movements are influenced by not just the current direction of nearby conspecifics, but also those encountered in the recent past. Given the simplicity of prawns as a study system our research suggests that self-propelled particle models of collective motion should, if they are to be realistic at multiple biological scales, include memory of previous interactions and other non-Markovian effects.

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Geographical breakdown

Country Count As %
Switzerland 2 5%
United States 2 5%
India 1 3%
Unknown 32 86%

Demographic breakdown

Readers by professional status Count As %
Researcher 7 19%
Student > Ph. D. Student 6 16%
Professor 4 11%
Student > Bachelor 3 8%
Professor > Associate Professor 3 8%
Other 9 24%
Unknown 5 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 11 30%
Engineering 6 16%
Physics and Astronomy 4 11%
Computer Science 3 8%
Medicine and Dentistry 2 5%
Other 5 14%
Unknown 6 16%