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How to Get the Most out of Your Curation Effort

Overview of attention for article published in PLoS Computational Biology, May 2009
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Title
How to Get the Most out of Your Curation Effort
Published in
PLoS Computational Biology, May 2009
DOI 10.1371/journal.pcbi.1000391
Pubmed ID
Authors

Andrey Rzhetsky, Hagit Shatkay, W. John Wilbur

Abstract

Large-scale annotation efforts typically involve several experts who may disagree with each other. We propose an approach for modeling disagreements among experts that allows providing each annotation with a confidence value (i.e., the posterior probability that it is correct). Our approach allows computing certainty-level for individual annotations, given annotator-specific parameters estimated from data. We developed two probabilistic models for performing this analysis, compared these models using computer simulation, and tested each model's actual performance, based on a large data set generated by human annotators specifically for this study. We show that even in the worst-case scenario, when all annotators disagree, our approach allows us to significantly increase the probability of choosing the correct annotation. Along with this publication we make publicly available a corpus of 10,000 sentences annotated according to several cardinal dimensions that we have introduced in earlier work. The 10,000 sentences were all 3-fold annotated by a group of eight experts, while a 1,000-sentence subset was further 5-fold annotated by five new experts. While the presented data represent a specialized curation task, our modeling approach is general; most data annotation studies could benefit from our methodology.

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Geographical breakdown

Country Count As %
United States 8 10%
Germany 2 3%
United Kingdom 2 3%
France 2 3%
Mexico 2 3%
Norway 1 1%
Sweden 1 1%
New Zealand 1 1%
Portugal 1 1%
Other 2 3%
Unknown 58 73%

Demographic breakdown

Readers by professional status Count As %
Researcher 27 34%
Student > Ph. D. Student 15 19%
Student > Master 8 10%
Professor > Associate Professor 6 8%
Student > Bachelor 5 6%
Other 13 16%
Unknown 6 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 36 45%
Computer Science 24 30%
Medicine and Dentistry 3 4%
Psychology 2 3%
Business, Management and Accounting 1 1%
Other 8 10%
Unknown 6 8%