RT @caseybergman: Discovery that LOH impacts TE profiles in #Drosophila cell lines was enabled by @hanshunhua's development of a new tool c…
Discovery that LOH impacts TE profiles in #Drosophila cell lines was enabled by @hanshunhua's development of a new tool called ngs_te_mapper2 to detect & estimate intra-sample TE allele frequencies using single end short read data, detailed here: https
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
@nepaliaashish there seems to be a handful of approaches (including this one)
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
RT @caseybergman: My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally de…
My student @hanshunhua with help from Preston Basting has re-implemented the split-read TE detection method originally described in Linheiro & Bergman 2012 (https://t.co/a0Aczp6ADH). The new implementation, called ngs_te_mapper2, can be found here: htt
RT @caseybergman: @RiboGuy @CedricFeschotte Sometimes hard to determine the TSD for specific family from reference genome insertions bc not…
@RiboGuy @CedricFeschotte Sometimes hard to determine the TSD for specific family from reference genome insertions bc not always clear where TE termini ends and TSD begins, but relatively easy with non-reference insertions & resequencing data https://t
trying to summarise this article http://t.co/mKBD5Pptxi word limit: 1500
@caseybergman "Release 5 D.melanogaster genome sequence" mentioned in http://t.co/mKBD5Pptxi is that from FlyBase or http://t.co/TJgmp0jlfp?
@jrossibarra yeah, it's freaky - same location & orientation - see paragraph after table 4 in: http://t.co/kmGeEsSS4O
@pedrobeltrao @Poppi62 - I've also done it once (http://t.co/y4fn2Y0N) - @mfenner has a post on this issue here: http://t.co/P7RUsrud
Initial release of ngs_te_mapper (http://t.co/purbFmHI) - our method for detecting de novo TE insertions described in (http://t.co/lkEIRguN)
Initial release of ngs_te_mapper (http://t.co/purbFmHI) - our method for detecting de novo TE insertions described in (http://t.co/lkEIRguN)
Initial release of ngs_te_mapper (http://t.co/purbFmHI) - our method for detecting de novo TE insertions described in (http://t.co/lkEIRguN)
Initial release of ngs_te_mapper (http://t.co/purbFmHI) - our method for detecting de novo TE insertions described in (http://t.co/lkEIRguN)
Initial release of ngs_te_mapper (http://t.co/purbFmHI) - our method for detecting de novo TE insertions described in (http://t.co/lkEIRguN)
Initial release of ngs_te_mapper (http://t.co/purbFmHI) - our method for detecting de novo TE insertions described in (http://t.co/lkEIRguN)
Initial release of ngs_te_mapper (http://t.co/purbFmHI) - our method for detecting de novo TE insertions described in (http://t.co/lkEIRguN)
RT @caseybergman: Mu transposome provides evidence for our hypothesis that DDE-containing integrases/transposases target palindromes (http://t.co/y4fn2Y0N)
RT @caseybergman: Mu transposome provides evidence for our hypothesis that DDE-containing integrases/transposases target palindromes (http://t.co/y4fn2Y0N)
Mu transposome provides evidence for our hypothesis that DDE-containing integrases/transposases target palindromes (http://t.co/y4fn2Y0N)
looking for transposable elements in drosophila using whole genome resequencing (Linheiro & Bergman 2012, PLoS One) http://t.co/JYEJpxdv
Plos ONE.Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in D.melanogaster. http://t.co/2IGuzjoj
Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster http://t.co/UtS3NBOj